Soma Segmentation and Region Mapping
We first segment and analyze all individual cells, quantify them, and then register each cell to the 71 regions defined in the
Allen Brain Atlas.
You simply submit your dataset into our pipeline, and get notified by results via e-mail. All results are also accessible from your account in our socomap dashboard.
Secure Upload and Storage
All uploads are encrypted, and get securely stored and backed up on storage servers located in the EU.
Highest Scientific Standards
We commit ourselves to delivering high-quality results by combining latest machine-learning research with in-house proofreading by our QA team, all holding Master degrees in Biology.
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Visualization of soma segmentation, color-coded per region (scale bar represents 1.4 mm).
We currently offer 2 segmentation options on light microscopy datasets. If these options don’t fit your dataset or if you are looking for different services, please
get in touch with us.
Cell Body/Soma Segmentation
Shape, location, and number of all cells in the dataset
Brain Region Mapping
to Allen Brain Atlas
Dataset mapping to the Allen Brain Atlas
Labeling of existing soma segmentation according to their brain region
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